If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ), 'gf_id' => 'HOM05D000795', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000795' ), 'data_identifier' => 'HOM05D000795', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000795', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p26550' => 'bna', 'A01p26560' => 'bna', 'A02p02620' => 'bna', 'A06p05160' => 'bna', 'A06p05170' => 'bna', 'A06p21590' => 'bna', 'A06p21620' => 'bna', 'A08p32540' => 'bna', 'A08p35320' => 'bna', 'A09p66020' => 'bna', 'A09p66030' => 'bna', 'A10p17980' => 'bna', 'A10p18000' => 'bna', 'Aa31LG11G15330' => 'aar', 'Aa31LG1G12730' => 'aar', 'Aa31LG1G1840' => 'aar', 'Aa31LG4G14090' => 'aar', 'Aa31sc1123G10' => 'aar', 'Aa31sc122G40' => 'aar', 'Aa31sc385G20' => 'aar', 'Aa31sc412G10' => 'aar', 'Aa31sc412G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.433' => 'aag', 'Actinidia07165' => 'ach', 'Actinidia07166' => 'ach', 'Actinidia08782' => 'ach', 'Actinidia15070' => 'ach', 'Actinidia24128' => 'ach', 'Actinidia33336' => 'ach', 'Actinidia35763' => 'ach', 'Ah.03g132910' => 'amhyb', 'Ah.08g216710' => 'amhyb', 'Ah.08g216730' => 'amhyb', 'Ah.15g094080' => 'amhyb', 'AL1G18450' => 'aly', 'AL1G18460' => 'aly', 'AL1G24580' => 'aly', 'AL5G23550' => 'aly', 'AL5G23560' => 'aly', 'AL6G25330' => 'aly', 'AL8G37360' => 'aly', 'AL8G37370' => 'aly', 'Aqoxy1G01167' => 'aox', 'Aqoxy1G01168' => 'aox', 'Aqoxy3G02843' => 'aox', 'Aqoxy3G02844' => 'aox', 'arahy.Tifrunner.gnm1.ann1.4EVV01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9T1BFY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2K8G5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUHC67' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DQ5UA2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EZT0IR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9JC4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HDS2MK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9TPLA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8NKA7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RI9HIF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T1YI04' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T69QN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T8IHE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPTF8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ULV1SL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZZ6TG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WJZ79N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQX55W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y64LBN' => 'arhy', 'AT1G08090' => 'ath', 'AT1G08100' => 'ath', 'AT1G12940' => 'ath', 'AT3G45060' => 'ath', 'AT4G14358' => 'ath', 'AT5G14570' => 'ath', 'AT5G60770' => 'ath', 'AT5G60780' => 'ath', 'ATR0043G033' => 'atr', 'ATR1152G074' => 'atr', 'Atru.chr11.2081' => 'acertr', 'Atru.chr11.2082' => 'acertr', 'Atru.chr11.2083' => 'acertr', 'Atru.chr11.2084' => 'acertr', 'Atru.chr3.3559' => 'acertr', 'Atru.chr3.3560' => 'acertr', 'Atru.chr3.3561' => 'acertr', 'Atru.chr3.3562' => 'acertr', 'Atru.chr6.2263' => 'acertr', 'Atru.chr6.2354' => 'acertr', 'Atru.chr8.1827' => 'acertr', 'Atru.chr8.1828' => 'acertr', 'Atru.chr8.1829' => 'acertr', 'AUR62000316' => 'cqu', 'AUR62000317' => 'cqu', 'AUR62000318' => 'cqu', 'AUR62001493' => 'cqu', 'AUR62001495' => 'cqu', 'AUR62001496' => 'cqu', 'AUR62003509' => 'cqu', 'AUR62005426' => 'cqu', 'AUR62005427' => 'cqu', 'AUR62006661' => 'cqu', 'AUR62006662' => 'cqu', 'AUR62006663' => 'cqu', 'AUR62009874' => 'cqu', 'AUR62009875' => 'cqu', 'AUR62009877' => 'cqu', 'AUR62014088' => 'cqu', 'AUR62017820' => 'cqu', 'BcaB01g01116' => 'bca', 'BcaB01g01119' => 'bca', 'BcaB01g01121' => 'bca', 'BcaB01g01122' => 'bca', 'BcaB03g13353' => 'bca', 'BcaB05g23418' => 'bca', 'BcaB05g23420' => 'bca', 'BcaB07g34050' => 'bca', 'BcaB07g34052' => 'bca', 'BcaB08g36378' => 'bca', 'BcaB08g36379' => 'bca', 'BcaB08g36380' => 'bca', 'BcaC01g01988' => 'bca', 'BcaC01g01993' => 'bca', 'BcaC01g01995' => 'bca', 'BcaC01g01998' => 'bca', 'BcaC01g02000' => 'bca', 'BcaC03g13468' => 'bca', 'BcaC04g19740' => 'bca', 'BcaC04g19743' => 'bca', 'BcaC05g24727' => 'bca', 'BcaC05g24728' => 'bca', 'BcaC07g41964' => 'bca', 'BcaC07g42505' => 'bca', 'BcaC07g42506' => 'bca', 'BcaC09g49700' => 'bca', 'BcaC09g49702' => 'bca', 'BcaNung03114' => 'bca', 'BcaNung06683' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00170' => 'bna', 'BolC1t03339H' => 'bol', 'BolC1t03341H' => 'bol', 'BolC2t06643H' => 'bol', 'BolC2t07221H' => 'bol', 'BolC3t19226H' => 'bol', 'BolC3t19227H' => 'bol', 'BolC3t19234H' => 'bol', 'BolC3t19239H' => 'bol', 'BolC5t29375H' => 'bol', 'BolC5t29376H' => 'bol', 'BolC8t47155H' => 'bol', 'BolC8t49202H' => 'bol', 'BolC8t52547H' => 'bol', 'BolC8t52548H' => 'bol', 'BolC9t58226H' => 'bol', 'BolC9t58229H' => 'bol', 'BraA01t02585Z' => 'bra', 'BraA01t02586Z' => 'bra', 'BraA02t05230Z' => 'bra', 'BraA06t25248Z' => 'bra', 'BraA06t25250Z' => 'bra', 'BraA08t35178Z' => 'bra', 'BraA09t41941Z' => 'bra', 'BraA09t41942Z' => 'bra', 'BraA10t43873Z' => 'bra', 'BraA10t43875Z' => 'bra', 'C01p33790' => 'bna', 'C01p33800' => 'bna', 'C02p07100' => 'bna', 'C02p11470' => 'bna', 'C03p69670' => 'bna', 'C03p69690' => 'bna', 'C03p69700' => 'bna', 'C03p69740' => 'bna', 'C03p69770' => 'bna', 'C05p06210' => 'bna', 'C05p06220' => 'bna', 'C08p03510' => 'bna', 'C08p15750' => 'bna', 'C08p50180' => 'bna', 'C08p50190' => 'bna', 'C09p53490' => 'bna', 'C09p53500' => 'bna', 'C09p53530' => 'bna', 'CAN.G1014.27' => 'can', 'CAN.G1169.12' => 'can', 'CAN.G1755.1' => 'can', 'CAN.G1755.2' => 'can', 'CAN.G22.48' => 'can', 'CAN.G298.45' => 'can', 'CAN.G309.16' => 'can', 'CAN.G309.17' => 'can', 'CAN.G681.70' => 'can', 'CAN.G973.14' => 'can', 'CAN.G986.39' => 'can', 'CANSAT01G2786' => 'cansat', 'CANSAT54G1006' => 'cansat', 'CANSAT54G1329' => 'cansat', 'CANSAT54G1667' => 'cansat', 'CANSAT64G0888' => 'cansat', 'CARHR007910' => 'chi', 'CARHR013290' => 'chi', 'CARHR105050' => 'chi', 'CARHR150910' => 'chi', 'CARHR152890' => 'chi', 'CARHR198750' => 'chi', 'CARHR274450' => 'chi', 'CARHR274460' => 'chi', 'Carub.0001s0744' => 'cru', 'Carub.0001s0745' => 'cru', 'Carub.0001s1271' => 'cru', 'Carub.0005s1084' => 'cru', 'Carub.0005s1085' => 'cru', 'Carub.0006s1274' => 'cru', 'Carub.0008s2145' => 'cru', 'Carub.0008s2146' => 'cru', 'Ca_19300_v3' => 'car', 'Ca_22501_v3' => 'car', 'Cc01_g10620' => 'ccan', 'Cc01_g10630' => 'ccan', 'Cc01_g10640' => 'ccan', 'Cc01_g10650' => 'ccan', 'Cc11_g15480' => 'ccan', 'CDE06G2206' => 'cde', 'CDE06G2459' => 'cde', 'CDE07G1132' => 'cde', 'CDE07G1389' => 'cde', 'CDE07G1679' => 'cde', 'Cfa005169' => 'cfa', 'Cfa007394' => 'cfa', 'Cfa007933' => 'cfa', 'Cfa010351' => 'cfa', 'Cfa023533' => 'cfa', 'Cfa023713' => 'cfa', 'Ciclev10013718m.g' => 'ccl', 'Ciclev10015129m.g' => 'ccl', 'Ciclev10028173m.g' => 'ccl', 'Ciclev10029836m.g' => 'ccl', 'Ciclev10030358m.g' => 'ccl', 'Ciclev10031126m.g' => 'ccl', 'CiPaw.04G027400' => 'cil', 'CiPaw.05G187600' => 'cil', 'CiPaw.13G117800' => 'cil', 'CiPaw.14G086400' => 'cil', 'ClCG03G002620' => 'cla', 'ClCG03G002640' => 'cla', 'ClCG05G025540' => 'cla', 'COL.COLO4_03627' => 'col', 'COL.COLO4_24229' => 'col', 'COL.COLO4_24230' => 'col', 'COL.COLO4_26978' => 'col', 'COL.COLO4_29065' => 'col', 'COL.COLO4_34708' => 'col', 'COL.COLO4_34710' => 'col', 'Cpa.g.sc108.50' => 'cpa', 'Cpa.g.sc56.19' => 'cpa', 'Cpa.g.sc65.29' => 'cpa', 'Cpa.g.sc65.30' => 'cpa', 'Cpa.g.sc69.88' => 'cpa', 'Cre02.g110800' => 'cre', 'Cre03.g150101' => 'cre', 'Cre03.g150151' => 'cre', 'Cre06.g277450' => 'cre', 'Cre09.g396000' => 'cre', 'Cre09.g410800' => 'cre', 'Cre09.g410850' => 'cre', 'CsaV3_1G013360' => 'csa', 'CsaV3_1G013370' => 'csa', 'CsaV3_5G031350' => 'csa', 'CSS0001304' => 'camsi', 'CSS0001748' => 'camsi', 'CSS0010491' => 'camsi', 'CSS0035628' => 'camsi', 'CSS0041903' => 'camsi', 'CSS0042472' => 'camsi', 'DCAR_005010' => 'dca', 'DCAR_005012' => 'dca', 'DCAR_006083' => 'dca', 'DCAR_006085' => 'dca', 'DCAR_006088' => 'dca', 'DCAR_006090' => 'dca', 'DCAR_006091' => 'dca', 'DCAR_006094' => 'dca', 'DCAR_006095' => 'dca', 'DCAR_006096' => 'dca', 'DCAR_006098' => 'dca', 'DCAR_006100' => 'dca', 'DCAR_006103' => 'dca', 'DCAR_006104' => 'dca', 'DCAR_007069' => 'dca', 'DCAR_009304' => 'dca', 'DCAR_018784' => 'dca', 'DCAR_018787' => 'dca', 'DCAR_021713' => 'dca', 'DCAR_022769' => 'dca', 'DCAR_031126' => 'dca', 'Dinv15256' => 'din', 'Dinv24815' => 'din', 'Dinv33464' => 'din', 'Dinv34695' => 'din', 'Dinv34696' => 'din', 'Dinv35777' => 'din', 'Duzib147G1289' => 'dzi', 'Duzib150G0610' => 'dzi', 'Duzib248G0987' => 'dzi', 'Duzib251G0575' => 'dzi', 'ECA233G0709' => 'eca', 'ECA234G2533' => 'eca', 'ECA238G1217' => 'eca', 'ECA248G2406' => 'eca', 'ECA248G2669' => 'eca', 'ECA248G3016' => 'eca', 'ECA248G3838' => 'eca', 'EL10Ac1g00619' => 'bvu', 'EL10Ac6g13720' => 'bvu', 'EL10Ac6g13721' => 'bvu', 'EL10Ac6g13723' => 'bvu', 'EL10Ac6g13725' => 'bvu', 'EL10Ac7g16398' => 'bvu', 'EL10Ac7g16400' => 'bvu', 'EL10Ac7g16776' => 'bvu', 'EL10Ac7g16777' => 'bvu', 'EL10Ac7g16779' => 'bvu', 'Eucgr.B03304' => 'egr', 'Eucgr.H02533' => 'egr', 'Eucgr.J00898' => 'egr', 'Eucgr.J02230' => 'egr', 'FAN05G0806' => 'fan', 'FAN07G2523' => 'fan', 'FAN09G0732' => 'fan', 'FAN12G0627' => 'fan', 'FAN12G0819' => 'fan', 'FAN12G2271' => 'fan', 'FAN12G4151' => 'fan', 'FAN14G0207' => 'fan', 'FAN14G1843' => 'fan', 'FAN16G1109' => 'fan', 'FAN16G3154' => 'fan', 'FAN21G1164' => 'fan', 'FAN21G3924' => 'fan', 'FAN25G1454' => 'fan', 'FAN25G3796' => 'fan', 'FvH4_3g31210' => 'fve', 'FvH4_3g31240' => 'fve', 'FvH4_4g25770' => 'fve', 'FvH4_4g25780' => 'fve', 'FvH4_6g02140' => 'fve', 'FvH4_6g51160' => 'fve', 'Glyma.08G284000' => 'gma', 'Glyma.11G195200' => 'gma', 'Glyma.12G078866' => 'gma', 'Glyma.12G078932' => 'gma', 'Glyma.12G176900' => 'gma', 'Glyma.13G323800' => 'gma', 'Glyma.18G141900' => 'gma', 'Gohir.A03G031200' => 'ghi', 'Gohir.A03G031300' => 'ghi', 'Gohir.A05G106200' => 'ghi', 'Gohir.A07G222300' => 'ghi', 'Gohir.A08G199900' => 'ghi', 'Gohir.A09G147900' => 'ghi', 'Gohir.A12G144300' => 'ghi', 'Gohir.D03G137100' => 'ghi', 'Gohir.D03G137200' => 'ghi', 'Gohir.D05G106200' => 'ghi', 'Gohir.D07G229000' => 'ghi', 'Gohir.D08G217000' => 'ghi', 'Gohir.D09G143700' => 'ghi', 'Gohir.D12G148900' => 'ghi', 'Gorai.001G264100' => 'gra', 'Gorai.003G144100' => 'gra', 'Gorai.003G144200' => 'gra', 'Gorai.004G230700' => 'gra', 'Gorai.006G165000' => 'gra', 'Gorai.008G160300' => 'gra', 'Gorai.009G110300' => 'gra', 'GSVIVG01013802001' => 'vvi', 'GSVIVG01013803001' => 'vvi', 'GSVIVG01025721001' => 'vvi', 'GSVIVG01031518001' => 'vvi', 'GSVIVG01031522001' => 'vvi', 'GSVIVG01032430001' => 'vvi', 'HanXRQChr01g0018781' => 'han', 'HanXRQChr01g0018801' => 'han', 'HanXRQChr01g0018811' => 'han', 'HanXRQChr01g0018851' => 'han', 'HanXRQChr11g0346321' => 'han', 'HanXRQChr11g0346331' => 'han', 'HanXRQChr11g0346351' => 'han', 'HanXRQChr11g0346361' => 'han', 'HanXRQChr11g0346391' => 'han', 'HanXRQChr12g0383701' => 'han', 'HanXRQChr13g0396621' => 'han', 'HanXRQChr13g0396641' => 'han', 'HanXRQChr14g0450491' => 'han', 'Haze_12223' => 'cav', 'Haze_12883' => 'cav', 'Haze_13359' => 'cav', 'Haze_14708' => 'cav', 'Haze_18672' => 'cav', 'Haze_23758' => 'cav', 'Hma1.2p1_0223F.1_g094190' => 'hma', 'Hma1.2p1_0297F.1_g116970' => 'hma', 'Hma1.2p1_2125F.1_g314570' => 'hma', 'Hma1.2p1_3699F.1_g337290' => 'hma', 'HPP92_024709' => 'vpl', 'Hund25376' => 'sun', 'Lalb_Chr03g0027601' => 'lal', 'Lalb_Chr05g0228311' => 'lal', 'Lalb_Chr16g0392251' => 'lal', 'Lj1A195T29' => 'lonja', 'Lj1A196G30' => 'lonja', 'Lj1A196T31' => 'lonja', 'Lj1A196T33' => 'lonja', 'Lj1C195T4' => 'lonja', 'Lj1C195T6' => 'lonja', 'Lj1g0007879' => 'lja', 'Lj3A1055T51' => 'lonja', 'Lj3g0000918' => 'lja', 'Lj3g0004356' => 'lja', 'Lj4g0001204' => 'lja', 'Lj6A809T53' => 'lonja', 'Lj7A596T39' => 'lonja', 'Lsat_1_v5_gn_0_15821' => 'lsa', 'Lsat_1_v5_gn_1_62361' => 'lsa', 'Lsat_1_v5_gn_1_62401' => 'lsa', 'Lsat_1_v5_gn_1_62441' => 'lsa', 'Lsat_1_v5_gn_1_62501' => 'lsa', 'Lsat_1_v5_gn_1_63320' => 'lsa', 'Lsat_1_v5_gn_1_63341' => 'lsa', 'Lsat_1_v5_gn_1_63501' => 'lsa', 'Lsat_1_v5_gn_1_63521' => 'lsa', 'Lsat_1_v5_gn_2_91541' => 'lsa', 'Lsat_1_v5_gn_4_4881' => 'lsa', 'Lsat_1_v5_gn_6_43581' => 'lsa', 'Lsat_1_v5_gn_6_45380' => 'lsa', 'Manes.08G009300' => 'mes', 'Manes.11G149700' => 'mes', 'Manes.11G149900' => 'mes', 'Manes.11G150000' => 'mes', 'Manes.13G027000' => 'mes', 'Manes.17G114900' => 'mes', 'Mapoly0020s0037' => 'mpo', 'Mapoly0020s0038' => 'mpo', 'Mapoly0020s0040' => 'mpo', 'Mapoly0020s0041' => 'mpo', 'Mapoly0020s0043' => 'mpo', 'Mapoly0020s0044' => 'mpo', 'Mapoly0020s0045' => 'mpo', 'Mapoly0020s0046' => 'mpo', 'Mapoly0020s0050' => 'mpo', 'Mapoly0054s0098' => 'mpo', 'Mapoly0068s0077' => 'mpo', 'Mapoly0127s0009' => 'mpo', 'Mapoly0131s0030' => 'mpo', 'Mapoly0217s0002' => 'mpo', 'Mapoly0217s0004' => 'mpo', 'Mapoly0404s0001' => 'mpo', 'Mapoly0847s0001' => 'mpo', 'Mapoly1022s0001' => 'mpo', 'Mapoly1563s0001' => 'mpo', 'MBI10_g44382_MAGBIO' => 'mbi', 'MBI16_g23830_MAGBIO' => 'mbi', 'MBI18_g25261_MAGBIO' => 'mbi', 'MBI18_g25262_MAGBIO' => 'mbi', 'MCO01G378' => 'mco', 'MCO01G589' => 'mco', 'MCO01G627' => 'mco', 'MCO13G356' => 'mco', 'MD03G1124900' => 'mdo', 'MD03G1125000' => 'mdo', 'MD09G1028900' => 'mdo', 'MD11G1141700' => 'mdo', 'MD11G1141800' => 'mdo', 'MD11G1141900' => 'mdo', 'MD13G1096700' => 'mdo', 'MD17G1030600' => 'mdo', 'Medtr4g057865' => 'mtr', 'Medtr4g057890' => 'mtr', 'Medtr8g069775' => 'mtr', 'MELO3C000140.2' => 'cme', 'MELO3C004970.2' => 'cme', 'MELO3C011976.2' => 'cme', 'MELO3C035334.2' => 'cme', 'Migut.B01100' => 'egut', 'Migut.B01103' => 'egut', 'Migut.B01104' => 'egut', 'Migut.D02269' => 'egut', 'Migut.D02270' => 'egut', 'Migut.D02272' => 'egut', 'Migut.D02275' => 'egut', 'Migut.E00186' => 'egut', 'Migut.L01472' => 'egut', 'Migut.L01475' => 'egut', 'Migut.N02577' => 'egut', 'Migut.N02578' => 'egut', 'Migut.O00627' => 'egut', 'Migut.O00667' => 'egut', 'Migut.O00827' => 'egut', 'Migut.O00844' => 'egut', 'MSTRG.2410' => 'ama', 'MSTRG.579' => 'ama', 'Nitab4.5_0000063g0010' => 'nta', 'Nitab4.5_0000106g0360' => 'nta', 'Nitab4.5_0000567g0010' => 'nta', 'Nitab4.5_0000567g0030' => 'nta', 'Nitab4.5_0001421g0010' => 'nta', 'Nitab4.5_0001421g0020' => 'nta', 'Nitab4.5_0001523g0010' => 'nta', 'Nitab4.5_0002255g0010' => 'nta', 'Nitab4.5_0002410g0020' => 'nta', 'Nitab4.5_0002529g0080' => 'nta', 'Nitab4.5_0002693g0030' => 'nta', 'Nitab4.5_0005323g0010' => 'nta', 'Nitab4.5_0005323g0020' => 'nta', 'Nitab4.5_0007682g0010' => 'nta', 'Nitab4.5_0007684g0010' => 'nta', 'Nitab4.5_0009500g0010' => 'nta', 'Nitab4.5_0012186g0010' => 'nta', 'Nn2g11568' => 'nnu', 'Nn3g16775' => 'nnu', 'Nn4g22682' => 'nnu', 'Oeu012699.1' => 'oeu', 'Oeu018375.1' => 'oeu', 'Oeu027207.1' => 'oeu', 'Oeu034211.1' => 'oeu', 'Oeu034512.1' => 'oeu', 'Oeu034515.1' => 'oeu', 'Oeu034516.1' => 'oeu', 'Oeu053675.1' => 'oeu', 'Oeu056288.1' => 'oeu', 'Oeu059923.1' => 'oeu', 'Oeu059924.1' => 'oeu', 'Os01g0547600' => 'osa', 'Os01g0704100' => 'osa', 'Os02g0112100' => 'osa', 'Os02g0112600' => 'osa', 'Peaxi162Scf00029g00215' => 'pax', 'Peaxi162Scf00029g00238' => 'pax', 'Peaxi162Scf00080g00095' => 'pax', 'Peaxi162Scf00115g00006' => 'pax', 'Peaxi162Scf00115g00014' => 'pax', 'Peaxi162Scf00115g00028' => 'pax', 'Peaxi162Scf00115g00029' => 'pax', 'Peaxi162Scf00115g00038' => 'pax', 'Peaxi162Scf00115g00047' => 'pax', 'Peaxi162Scf00311g00312' => 'pax', 'Peaxi162Scf00515g10013' => 'pax', 'Peaxi162Scf01159g00002' => 'pax', 'Peaxi162Scf01159g00004' => 'pax', 'Peaxi162Scf38876g00001' => 'pax', 'Peaxi162Scf43314g00001' => 'pax', 'Peaxi162Scf50378g00001' => 'pax', 'PGR083G0571' => 'pgr', 'PGR102G2359' => 'pgr', 'PGR119G0031' => 'pgr', 'PGR119G1197' => 'pgr', 'PGSC0003DMG400001145' => 'stu', 'PGSC0003DMG400006913' => 'stu', 'PGSC0003DMG400015734' => 'stu', 'PGSC0003DMG400016996' => 'stu', 'PGSC0003DMG400019674' => 'stu', 'PGSC0003DMG400019675' => 'stu', 'PGSC0003DMG400042160' => 'stu', 'PGSC0003DMG401011998' => 'stu', 'PGSC0003DMG402011998' => 'stu', 'Phvul.003G062800' => 'pvu', 'Phvul.005G132200' => 'pvu', 'Phvul.011G083500' => 'pvu', 'Potri.001G348300' => 'ptr', 'Potri.004G213716' => 'ptr', 'Potri.009G008500' => 'ptr', 'Potri.009G008600' => 'ptr', 'Potri.012G087700' => 'ptr', 'Potri.015G081300' => 'ptr', 'Potri.T124608' => 'ptr', 'Potri.T124708' => 'ptr', 'Pp3c16_10420' => 'ppa', 'Pp3c19_10820' => 'ppa', 'Pp3c19_10950' => 'ppa', 'Pp3c19_21550' => 'ppa', 'Pp3c22_21970' => 'ppa', 'Pp3c22_21990' => 'ppa', 'Pp3c22_5710' => 'ppa', 'Pp3c22_9060' => 'ppa', 'Pp3c7_13340' => 'ppa', 'PRCOL_00003049' => 'pco', 'PRCOL_00003055' => 'pco', 'PRCOL_00004549' => 'pco', 'Prupe.1G249000' => 'ppe', 'Prupe.3G289200' => 'ppe', 'Prupe.6G107400' => 'ppe', 'Prupe.6G107500' => 'ppe', 'Psat4g113000' => 'psa', 'Psat4g155600' => 'psa', 'Psat7g149120' => 'psa', 'PSO017G6495' => 'pso', 'PSO063G3078' => 'pso', 'PSO063G3466' => 'pso', 'PSO063G4815' => 'pso', 'PSO135G0096' => 'pso', 'PSO210G1315' => 'pso', 'PSO210G4190' => 'pso', 'PSO210G7605' => 'pso', 'PSO229G0097' => 'pso', 'PSO339G3535' => 'pso', 'PSO384G0002' => 'pso', 'PSO384G2636' => 'pso', 'PSO384G3715' => 'pso', 'PSO478G1016' => 'pso', 'PSO478G5194' => 'pso', 'PSO675G1509' => 'pso', 'PSO782G4711' => 'pso', 'PSO832G0671' => 'pso', 'PSO832G1228' => 'pso', 'PSO832G1245' => 'pso', 'PSO832G4077' => 'pso', 'QL01p015982' => 'qlo', 'QL02p075229' => 'qlo', 'QL03p058755' => 'qlo', 'QL03p067355' => 'qlo', 'QL93p1842_0096' => 'qlo', 'RcHm_v2.0_Chr2g0144651' => 'rch', 'RcHm_v2.0_Chr2g0144671' => 'rch', 'RcHm_v2.0_Chr2g0172721' => 'rch', 'RcHm_v2.0_Chr2g0172731' => 'rch', 'RcHm_v2.0_Chr2g0172751' => 'rch', 'RcHm_v2.0_Chr4g0433231' => 'rch', 'RcHm_v2.0_Chr4g0433241' => 'rch', 'RcHm_v2.0_Chr5g0057851' => 'rch', 'RcHm_v2.0_Chr5g0057861' => 'rch', 'Rhsim08G0051600' => 'rsi', 'Rhsim12G0042200' => 'rsi', 'Rhsim13G0098400' => 'rsi', 'RhsimUnG0111200' => 'rsi', 'Sabra09G0005000' => 'sbr', 'Sabra15G0105100' => 'sbr', 'Sabra15G0105200' => 'sbr', 'Sabra16G0227900' => 'sbr', 'SalBow2G2134' => 'sbo', 'SalBow3G0493' => 'sbo', 'SalBow3G0530' => 'sbo', 'SalBow3G1412' => 'sbo', 'SalBow3G1469' => 'sbo', 'SalBow3G3082' => 'sbo', 'SalBow7G4293' => 'sbo', 'SalBow8G1960' => 'sbo', 'Sc03g0007600' => 'sci', 'Sc04g0009370' => 'sci', 'Sc05g0004690' => 'sci', 'Sc06g0010950' => 'sci', 'Sc06g0010960' => 'sci', 'Sc15g0000500' => 'sci', 'Sc17g0005460' => 'sci', 'Sed0005833' => 'sed', 'Sed0026609' => 'sed', 'Sed0026933' => 'sed', 'SEGI_05269' => 'sgi', 'SEGI_06401' => 'sgi', 'SEGI_09186' => 'sgi', 'SEGI_10749' => 'sgi', 'SEGI_15031' => 'sgi', 'SEGI_18047' => 'sgi', 'SEGI_22039' => 'sgi', 'SEGI_24156' => 'sgi', 'SEGI_29244' => 'sgi', 'SEGI_38947' => 'sgi', 'SEGI_40813' => 'sgi', 'SGA_v2.0_scaffold180G39606' => 'sas', 'SGA_v2.0_scaffold263G45989' => 'sas', 'SGA_v2.0_scaffold27G11544' => 'sas', 'SGA_v2.0_scaffold87G27091' => 'sas', 'SMO133G0008' => 'smo', 'SMO347G0144' => 'smo', 'Solyc02g067790.4' => 'sly', 'Solyc06g010250.3' => 'sly', 'Solyc06g074990.3' => 'sly', 'Solyc11g069735.1' => 'sly', 'Solyc11g069750.3' => 'sly', 'Solyc11g069760.1' => 'sly', 'Sopen02g016900' => 'spe', 'Sopen06g005200' => 'spe', 'Sopen06g031400' => 'spe', 'Sopen06g031410' => 'spe', 'Sopen06g031420' => 'spe', 'Sopen10g008600' => 'spe', 'Sopen11g028530' => 'spe', 'Sopen11g028540' => 'spe', 'Sopen11g028550' => 'spe', 'Sp1g11510' => 'spa', 'Sp5g16190' => 'spa', 'Sp5g16200' => 'spa', 'Sp6g22350' => 'spa', 'Sp6g22360' => 'spa', 'Sp6g29460' => 'spa', 'SpUn1576_0010' => 'spa', 'TAR371G1181' => 'tar', 'TAR622G1149' => 'tar', 'TAR623G0748' => 'tar', 'TAR629G1097' => 'tar', 'THA.LOC104805288' => 'tha', 'THA.LOC104814823' => 'tha', 'THA.LOC104814824' => 'tha', 'THA.LOC104815738' => 'tha', 'Thecc.02G256000' => 'tca', 'Thecc.02G256100' => 'tca', 'Thecc.04G014900' => 'tca', 'Thecc.05G066800' => 'tca', 'Thecc.09G347300' => 'tca', 'Thecc.09G347400' => 'tca', 'Thecc.09G347500' => 'tca', 'Thhalv10002793m.g' => 'esa', 'Thhalv10002919m.g' => 'esa', 'Thhalv10007338m.g' => 'esa', 'Thhalv10007342m.g' => 'esa', 'Thhalv10007446m.g' => 'esa', 'Thhalv10013201m.g' => 'esa', 'Thhalv10013237m.g' => 'esa', 'Thhalv10013421m.g' => 'esa', 'TPR.G1083' => 'tpr', 'TPR.G24795' => 'tpr', 'TPR.G39374' => 'tpr', 'TWI36G0242' => 'twi', 'TWI36G1651' => 'twi', 'TWI75G0778' => 'twi', 'TWI79G0609' => 'twi', 'unitig_578.g15800' => 'ugi', 'unitig_8.g3937' => 'ugi', 'vmacro01145' => 'vma', 'vmacro01146' => 'vma', 'vmacro03275' => 'vma', 'vmacro18273' => 'vma', 'VMungo0251G1924' => 'vmu', 'VMungo1080G0713' => 'vmu', 'VMungo1127G0551' => 'vmu', 'Zm00001eb162310' => 'zma', 'Zm00001eb209670' => 'zma', 'Zm00001eb209690' => 'zma', 'Zm00001eb213690' => 'zma', 'Zm00001eb229750' => 'zma', 'Zm00001eb240850' => 'zma', 'Zm00001eb240860' => 'zma', 'Zm00001eb361110' => 'zma', 'Zm00001eb375870' => 'zma', 'Zm00001eb375880' => 'zma', 'Zm00001eb425910' => 'zma' ) $gf_id = 'HOM05D000795' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000795' ) $data_identifier = 'HOM05D000795' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 32, 'aar' => (int) 9, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 20, 'ath' => (int) 8, 'atr' => (int) 2, 'acertr' => (int) 13, 'cqu' => (int) 17, 'bca' => (int) 29, 'bol' => (int) 16, 'bra' => (int) 10, 'can' => (int) 11, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 4, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 6, 'dca' => (int) 21, 'din' => (int) 6, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 10, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 13, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 1, 'sun' => (int) 1, 'lal' => (int) 3, 'lonja' => (int) 9, 'lja' => (int) 4, 'lsa' => (int) 13, 'mes' => (int) 6, 'mpo' => (int) 19, 'mbi' => (int) 4, 'mco' => (int) 4, 'mdo' => (int) 8, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 16, 'ama' => (int) 2, 'nta' => (int) 17, 'nnu' => (int) 3, 'oeu' => (int) 11, 'osa' => (int) 4, 'pax' => (int) 16, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 3, 'ptr' => (int) 8, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 3, 'pso' => (int) 21, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 3, 'sgi' => (int) 11, 'sas' => (int) 4, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 9, 'spa' => (int) 7, 'tar' => (int) 4, 'tha' => (int) 4, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 4, 'ugi' => (int) 2, 'vma' => (int) 4, 'vmu' => (int) 3, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb425910' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1